cv

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education

Mar 2017 - (ongoing): Doctoral Degree (Dr.techn.) @ TU Wien (AT)

Sep 2014 - Feb 2017: Master’s Degree (Mgr.) @ Masaryk University (CZ)

Sep 2011 - Jun 2014: Bachelor’s Degree (Bc.) @ Masaryk University (CZ)

experience

Mar 2017 - now: Project Assistant @ TU Wien

Jul 2016 - Feb 2017: Project Assistant Without Degree @ TU Wien

Jun 2015 - Sep 2015: QA Intern @ Solarwinds

Feb 2015 - Jun 2015: Seminar Lecturer @ Masaryk University

Aug 2012 - Apr 2013: C++ programmer @ Celebrio

skills

Software development

Real-time graphics programming

Writing and presentation

Basic web development

languages

Czech (native), English (full proficiency), German (beginner, A1.2)

talks

HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models (conference paper presentation) @ IEEE Vis 2020, Salt Lake City (USA), October 2020 (given remotely). [recording]

Navigating and Exploring 3D Biological Environments (invited talk) @ Visualization II course, Masaryk University, Brno (CZ), April 2020 (given remotely).

Navigating and Exploring 3D Biological Environments @ CellVis Summit, KAUST (Saudi Arabia), November 2019. [recording]

Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments (conference paper presentation) @ IEEE Vis 2018, Berlin (DE), October 2018. [recording]

Challenges and advances in multi-scale biology data visualization (invited talk), Czech Technical University, Prague (CZ), November 2017.

community service

Reviewing: IEEE Vis 2018 (InfoVis), EuroVis 2019, CESCG 2019, IEEE TVCG (Jan2020), IEEE Vis 2020 (InfoVis, SciVis)
EuroVis 2018: Fast Forward Chair, Student Volunteer

publications

D. Kouřil, O. Strnad, P. Mindek, S. Halladjian, T. Isenberg, M. E. Gröller, I. Viola, “Molecumentary: Scalable Narrated Documentaries Using Molecular Visualization”, November 2020, preprint, arXiv:2011.02418 [cs.HC].

D. Kouřil, T. Isenberg, B. Kozlíková, M. Meyer, M. E. Gröller, I. Viola, “HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models”, IEEE Transactions on Visualization and Computer Graphics, Early Access, accepted February 2020. Doi: 10.1109/TVCG.2020.2975583

S. Halladjian, H. Miao, D. Kouřil, M. E. Gröller, I. Viola, T. Isenberg, “ScaleTrotter: Illustrative Visual Travels Across Negative Scales”, IEEE Transactions on Visualization and Computer Graphics, 26(1):654-664, January 2020. Doi: 10.1109/TVCG.2019.2934334

H. Miao, T. Klein, D. Kouřil, P. Mindek, K. Schatz, M. E. Gröller, B. Kozlíková, T. Isenberg, I. Viola, “Multiscale Molecular Visualization”, Journal of Molecular Biology, 431(6):1049-1070, March 2019. Doi: 10.1016/j.jmb.2018.09.004

D. Kouřil, L. Čmolík, B. Kozlíková, H-Y. Wu, G. Johnson, D. Goodsell, A. Olson, M. E. Gröller, I. Viola, “Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments”, IEEE Transactions on Visualization and Computer Graphics, 25(1):977-986, January 2019. Doi: 10.1109/TVCG.2018.2864491

T. Koch, D. Kouřil, T. Klein, P. Mindek, I. Viola, “Semantic Screen-Space Occlusion for Multiscale Molecular Visualization”, Eurographics Workshop on Visual Computing for Biology and Medicine, 197-201, September 2018. Doi: 10.2312/vcbm.20181245

P. Mindek, D. Kouřil, J. Sorger, D. Toloudis, B. Lyons, G. Johnson, M. E. Gröller, I. Viola, “Visualization Multi-Pipeline for Communicating Biology”, IEEE Transactions on Visualization and Computer Graphics, 24(1):883-892, January 2018. Doi: 10.1109/TVCG.2017.2744518